Storage effect

The storage effect is a coexistence mechanism proposed in the ecological theory of species coexistence, which tries to explain how such a wide variety of similar species are able to coexist within the same ecological community or guild. The storage effect was originally proposed in the 1980s[1] to explain coexistence in diverse communities of coral reef fish, however it has since been generalized to cover a variety of ecological communities.[2][3][4] The theory proposes one way for multiple species to coexist: in a changing environment, no species can be the best under all conditions.[5] Instead, each species must have a unique response to varying environmental conditions, and a way of buffering against the effects of bad years.[5] The storage effect gets its name because each population "stores" the gains in good years or microhabitats (patches) to help it survive population losses in bad years or patches.[1] One strength of this theory is that, unlike most coexistence mechanisms, the storage effect can be measured and quantified, with units of per-capita growth rate (offspring per adult per generation).[5]

The storage effect can be caused by both temporal and spatial variation. The temporal storage effect (often referred to as simply "the storage effect") occurs when species benefit from changes in year-to-year environmental patterns,[1] while the spatial storage effect occurs when species benefit from variation in microhabitats across a landscape.[6]

The concept

For the storage effect to operate, it requires variation (i.e. fluctuations) in the environment[1] and thus can be termed a "fluctuation-dependent mechanism". This variation can come from a large degree of factors, including resource availability, temperature, and predation levels. However, for the storage effect to function, this variation must change the birth, survival, or recruitment rate of species from year to year (or patch to patch).[1][6]

For competing species within the same community to coexist, they have to meet one fundamental requirement: the impact of competition from a species on itself must exceed its competitive impact on other species. In other words, intraspecific competition must exceed interspecific competition.[7] For example, jackrabbits living in the same area compete for food and nesting grounds. Such competition within the same species is called intraspecific competition, which limits the growth of the species itself. Members from different species can also compete. For instance, jackrabbits and cottontail rabbits also compete for food and nesting grounds. Competition between different species is called interspecific competition, which limits the growth of other species. Stable coexistence occurs when any one species in the community limits its own growth more strongly than the growth of others.

The storage effect mixes three essential ingredients to assemble a community of competing species that fulfill the requirement. They are 1) correlation between the quality of an environment and the amount of competition experienced by a population in that environment (i.e. covariance between environment and competition), 2) differences in species response to the same environment (i.e. species-specific environmental responses), and 3) the ability of a population to diminish the impact of competition under worsening environment (i.e. buffered population growth).[5] Each ingredient is described in detail below with an explanation why the combination of the three leads to species coexistence.

Covariance between environment and competition

The growth of a population can be strongly influenced by the environment it experiences. An environment consists of not only physical elements such as resource abundance, temperature, and level of physical disturbance, but also biological elements such as the abundance of natural enemies and mutualists.[8] Usually organisms reproduce more in a favorable environment (i.e. either during a good year, or within a good patch), build up their population densities, and lead themselves to a high level of competition due to this increasing crowding.[5] Such a trend means that higher quality environments usually correlate with a higher strength of competition experienced by the organisms in those environments. In short, a better environment results in stronger competition.[5] In statistics, such correlation means that there will be a non-zero covariance between the change of population density in response to the environment and that to the competition. That is why the first ingredient is called "covariance between environment and competition".

Species-specific environmental responses

Covariance between environment and competition suggests that organisms experience the strongest competition under their optimal environmental conditions because their populations grow most rapidly in those conditions. In nature, we often find that different species from the same community respond to the same conditions in distinctive manners. For example, plant species have different preferred levels of light and water availability, which affect their germination and physical growth rates.[2] Such differences in their response to the environment, which is called "species-specific environmental response," means no two species from a community will have the same best environment in a given year or a given patch. As a result, when a species is under its optimal environmental conditions and thus experiencing the strongest intraspecific competition, other species from the same community only experience the strongest interspecific competition coming from that species, but not the strongest intraspecific competition coming from themselves.

Buffered population growth

A population can decline when environmental conditions worsen and when competition intensifies. If a species cannot limit the impact of competition in a hostile environment, its population will crash, and it will become locally extinct.[1] Marvelously, in nature organisms are often able to slow down the rate of population decline in a hostile environment by alleviating the impact of competition. In so doing, they are able to set up a lower limit on the rate of their population decline.[1] This phenomenon is called "buffered population growth", which occurs under a variety of situations. Under the temporal storage effect, it can be accomplished by the adults of a species having long life spans, which are relatively unaffected by environmental stressors. For example, an adult tree is unlikely to be killed by a few weeks of drought or a single night of freezing temperatures, whereas a seedling may not survive these conditions.[4] Even if all seedlings are killed by bad environmental conditions, the long-lived adults are able to keep the overall population from crashing.[1] Moreover, the adults usually adopt strategies such as dormancy or hibernation under a hostile environment, which make them less sensitive to competition, and allows them to buffer against the double blades of the hostile environment and competition from their rivals. For a different example, buffered population growth is attained by annual plants with a persistent seed bank.[2] Thanks to these long-lived seeds, the entire population cannot be destroyed by a single bad year. Moreover, the seeds stay dormant under unfavorable environmental conditions, avoiding direct competition with rivals who are favored by the same environment, and thus diminish the impact of competition in bad years.[2] There are some temporal situations in which buffered population growth is not expected to occur. Namely, when multiple generations do not overlap (such as Labord’s chameleon) or when adults have a high mortality rate (such as many aquatic insects, or some populations of the Eastern Fence Lizard [9]), buffered growth does not occur. Under the spatial storage effect, buffered population growth is generally automatic, because the effects of a detrimental microhabitat will only be experienced by individuals in that area, rather than the population as a whole.[6]

Outcome

The combined effect of (1) covariance between environment and competition, and (2) species-specific response to the environment decouple the strongest intraspecific and interspecific competition experienced by a species.[5] Intraspecific competition is strongest when a species is favored by the environment, whereas interspecific competition is strongest when its rivals are favored. After this decoupling, buffered population growth limits the impact of interspecific competition when a species is not favored by the environment. As a consequence, the impact of intraspecific competition on the species favored by a particular environment exceeds that of the interspecific competition on species less favored by that environment. We see that the fundamental requirement for species coexistence is fulfilled and thus storage effect is able to maintain stable coexistence in a community of competing species.[5]

For species to coexist in a community, all species must be able to recover from low density.[7] Not surprisingly, being a coexistence mechanism, the storage effect helps species when they become rare. It does so by making the abundant species’ effect on itself greater than its effect on the rare species.[5] The difference between species’ response to environmental conditions means that a rare species’ optimal environment is not the same as its competitors. Under these conditions, the rare species will experience low levels of interspecific competition. Because the rare species itself is rare, it will experience little impact from intraspecific competition as well, even at its highest possible levels of intraspecific competition. Free from the impact of competition, the rare species is able to make gains in these good years or patches.[1] Moreover, thanks to the buffered population growth, the rare species is able to survive the bad years or patches by "storing" the gains from the good years/patches. As a result, the population of any rare species is able to grow due to the storage effect.

One natural outcome from the covariance between environment and competition is that the species with very low densities will have more fluctuation in its recruitment rates than species with normal densities.[10] This occurs because in good environments, species with high densities will often experience large amount of crowding by members of the same species, thus limiting the benefits of good years/patches, and making good years/patches more similar to bad years/patches. Low-density species are rarely able to cause crowding, thus allowing significantly increased fitness in good years/patches.[1] Since the fluctuation in recruitment rate is an indicator of covariance between environment and competition, and since species-specific environmental response and buffered population growth can normally be assumed in nature, finding much stronger fluctuation in recruitment rates in rare and low-density species provides a strong indication that the storage effect is operating within a community.[4][10]

Mathematical formulation

It is important to note that the storage effect is not a model for population growth (such as the Lotka–Volterra equation) itself, but is an effect that appears in non-additive models of population growth.[5] Thus, the equations shown below will work for any arbitrary model of population growth, but will only be as accurate as the original model. The derivation below is taken from Chesson 1994.[5] It is a derivation of the temporal storage effect, but is very similar to the spatial storage effect.

The fitness of an individual, as well as expected growth rate, can be measured in terms of the average number of offspring it will leave during its lifetime. This parameter, r(t), is a function of both environmental factors, e(t), and how much the organism must compete with other individuals (both of its own species, and different species), c(t). Thus,

where g is an arbitrary function for growth rate. Throughout the article, subscripts are occasionally used to represent functions of a particular species (e.g. r j(t) is the fitness of species j). It is assumed that there must be some values e* and c*, such that g(e*, c*) = 0, representing a zero-population growth equilibrium. These values need not be unique, but for every e*, there is a unique c*. For ease of calculation, standard parameters E(t) and C(t) are defined, such that

Both E and C represent the effect of deviations in environmental response from equilibrium. E represents the effect that varying environmental conditions (e.g. rainfall patterns, temperature, food availability, etc.) have on fitness, in the absence of abnormal competitive effects. For the storage effect to occur, the environmental response for each species must be unique (i.e. E j(t) ≠ E i(t) when j ≠ i). C(t) represents how much average fitness is lowered as a result of competition. For example, if there is more rain during a given year, E(t) will likely increase. If more plants begin to bloom, and thus compete for that rain, then C(t) will increase as well. Because e* and c* are not unique, E(t) and C(t) are not unique, and thus one should choose them as conveniently as possible. Under most conditions (see Chesson 1994[5]), r(t) can be approximated as

where

γ represents the nonadditivity of growth rates. If γ = 0 (known as additivity) it means that the impact of competition on fitness does not change with the environment. If γ > 0 (superadditivity), it means that the adverse effects of competition during a bad year are relatively worse than during a good year. In other words, a population suffers more from competition in bad years than in good years. If γ < 0 (subadditivity, or buffered population growth), it means that the harm done by competition during a bad year is relatively minor when compared to a good year. In other words, the population is able to diminish the impact of competition as the environment worsens. As stated above, for the storage effect to contribute to species coexistence, we must have buffered population growth (i.e. it must be the case that γ < 0).

The long-term average of the above equation is

which, under environments with sufficient variation relative to mean effects, can be approximated as

For any effect to act as a coexistence mechanism, it must boost the average fitness of an individual when they are at below-normal population density. Otherwise, a species at low density (known as an `invader') will continue to dwindle, and this negative feedback will cause its extinction. When a species is at equilibrium (known as a `resident'), its average long-term fitness must be 0. For a species to recover from low density, its average fitness must be greater than 0. For the remainder of the text, we refer to functions of the invader with the subscript i, and to the resident with the subscript r.

A long-term average growth rate of an invader is often written as

where,

and, ΔI, the storage effect,

where

In this equation, qir tells us how much the competition experienced by r affects the competition experienced by i.

The biological meaning of the storage effect is expressed in the mathematical form of ΔI. The first term of the expression is covariance between environment and competition (Cov(E C)), scaled by a factor representing buffered population growth (γ). The difference between the first term and the second term represents the difference in species responses to the environment between the invader and the sum of the residents, scaled by the effect each resident has on the invader (qir).[5]

Predation

Recent work has extended what is known about the storage effect to include apparent competition (i.e., competition mediated through a shared predator).

These models showed that generalist predators can undermine the benefits of the storage effect that from competition.[11] This occurs because generalist predators depress population levels by eating individuals. When this happens, there are fewer individuals competing for resources. As a result, relatively abundant species are less constrained by competition for resource in favorable years (i.e., the covariance between environment and competition is weakened), and therefore the storage effect from competition is weakened. This conclusion follows the general trend that the introduction of a generalist predator will often weaken other competition-based coexistence mechanisms, and which result in competitive exclusion.[12][13]

Additionally, certain types of predators can produce a storage effect from predation. This effect has been shown for frequency-dependent predators, who are more likely to attack prey that are abundant,[14] and for generalist pathogens, who cause outbreaks when prey are abundant.[15] When prey species are especially numerous and active, frequency-dependent predators become more active, and pathogens outbreaks become more severe (i.e., there was a positive covariance between the environment and predation, analogous to the covariance between the environment and competition). As a result, abundant species are limited during their best years by high predation – an effect that is analogous to the storage effect from competition.

Empirical studies

The first empirical study that tested the requirements of the storage effect was done by Pake and Venable,[2] who looked at three desert annual plants. They experimentally manipulated density and water availability over a two-year period, and found that fitness and germination rates varied greatly from year to year, and over different environmental conditions. This shows that each species has a unique environmental response, and implied that likely there is a covariance between environment and competition. This, combined with the buffered population growth that is a product of a long-lived seed bank, showed that a temporal storage effect was probably an important factor in mediating coexistence. This study was also important, because it showed that variation in germination conditions could be a major factor promoting species coexitstence.[2]

The first attempt made at quantifying the temporal storage effect was by Cáceres in 1997.[3] Using 30 years of water-column data from Oneida Lake, New York, she studied the effect the storage effect had on two species of plankton (Daphnia galeata mendotae and D. pulicaria). These species of plankton lay diapausing eggs which, much like the seeds of annual plants, lay dormant in the sediment for many years before hatching. Cáceres found that the size of reproductive bouts were fairly uncorrelated between the two species. She also found, in the absence of the storage effect, D. galeata mendotae would have gone extinct. She was unable to measure certain important parameters (such as the rate of egg predation), but found that her results were robust to a wide range of estimates.[3]

The first test of the spatial storage effect was done by Sears and Chesson [10] in the desert area east of Portal, Arizona. Using a common neighbor-removal experiment, they examined whether coexistence between two annual plants, Erodium cicutarium and Phacelia popeii, was due to the spatial storage effect or resource partitioning. The storage effect was quantified in terms of number of inflorescences (a proxy for fitness) instead of actual population growth rate. They found that E. cicutarium was able to outcompete P. popeii in many situations, and in the absence of the storage effect, would likely competitively exclude P. popeii. However, they found a very strong difference in the covariance between environment and competition, which showed that some of the most favorable areas for P. popeii (the rare species), were unfavorable to E. cicutarium (the common species). This suggests that P. popeii is able to avoid strong interspecific competition in some good patches, and that this may be enough to compensate for losses in areas favorable to E. cicutarium.[10]

Colleen Kelly and colleagues have used congeneric species pairs to examine storage dynamics where species similarity is a natural outcome of relatedness and not dependent on researcher-based estimates. Initial studies were of 12 species of trees coexisting in a tropical deciduous forest at the Chamela Biological Station in Jalisco, Mexico.[4][16] For each of the 12 species they examined age structure (calculated from size and species-specific growth rate), and found that recruitment of young trees varies from year to year. Grouping the species into 6 congeneric pairs, the locally rarer species of each pair unanimously had a more irregular age distributions than the more common species. This finding strongly suggests that between closely competing tree species, the rarer species experiences stronger recruitment fluctuation than the commoner species. Such difference in recruitment fluctuation, combined with evidence of greater competitive ability in the rarer species of each pair, indicates a difference in covariance between the environment and competition between rare and common species. Since species-specific environmental response and buffered population growth can be naturally assumed, their finding strongly suggests that the storage effect operates in this tropical deciduous forest so as to maintain the coexistence between different tree species. Further work with these species has shown that the storage dynamic is a pairwise, competitive relationship, between congeneric species pairs, and possibly extending as successively nested pairs within a genus.[17]

Angert and colleagues demonstrated the temporal storage effect occurring in the desert annual plant community on Tumamoc Hill, Arizona.[18] Previous studies[19][20] had shown the annual plants in that community exhibited a trade-off between growth rate (a proxy for competitive ability) and water use efficiency (a proxy for drought tolerance). As a result, some plants grew better during wet years, while others grew better during dry years. This, combined with variation in germination rates, produced an overall community average storage effect of 0.103. In other words, the storage effect is expected to help the population of any species at low density to increase, on average, by 10.3% each generation, until it recovers from low density.[18]

References

  1. ^ a b c d e f g h i j Chesson, Peter; Warner, Robert (1981). "Environmental variability promotes coexistence in lottery competitive systems". The American Naturalist. 117 (6): 923–943. doi:10.1086/283778.
  2. ^ a b c d e f Pake, Catherine; Venable, D. Lawerance (1995). "Is coexistence of Sonoran desert annual plants mediated by temporal variability reproductive success". Ecology. 76 (1): 246–261. doi:10.2307/1940646. JSTOR 1940646.
  3. ^ a b c Cáceres, Carla (1997). "Temoral variation, dormancy, and coexistence: a field test of the storage effect". Proceedings of the National Academy of Sciences of the United States of America. 94 (17): 9171–9175. doi:10.1073/pnas.94.17.9171. PMC 23092.
  4. ^ a b c d Kelly, Colleen; Bowler, Michael (2002). "Coexistence and relative abundance in forest trees". Nature. 417 (6887): 437–440. doi:10.1038/417437a. PMID 12024212.
  5. ^ a b c d e f g h i j k l m Chesson, Peter (1994). "Multispecies competition in variable environments". Theoretical Population Biology. 45 (3): 227–276. doi:10.1006/tpbi.1994.1013.
  6. ^ a b c Chesson, Peter (2000). "General theory of competitive coexistence in spatially varying environments". Theoretical Population Biology. 58 (3): 211–237. doi:10.1006/tpbi.2000.1486. PMID 11120650.
  7. ^ a b Chesson, Peter (2000). "Mechanisms of maintenance of species diversity". Annual Review of Ecology and Systematics. 31: 343–366. doi:10.1146/annurev.ecolsys.31.1.343.
  8. ^ Andrewartha, Herbert George; Birch, Charles (1954). The distribution and abundance of animals. University of Chicago Press. ISBN 0-226-02026-6.
  9. ^ Tinkle, Donald; Ballinger, Royce (1972). "Sceloporus undulatus: a study of intraspecific comparative demography of a lizard". Ecology. 53 (4): 570–584. doi:10.2307/1934772. JSTOR 1934772.
  10. ^ a b c d Sears, Anna; Chesson, Peter (2007). "New methods for quantifying the spatial storage effect: an illustration with desert annuals". Ecology. 88 (9): 2240–2247. doi:10.1890/06-0645.1. PMID 17918402.
  11. ^ Kuang, Jessica; Chesson, Peter (2009). "Coexistence of annual plants: Generalist seed predation weakens the storage effect". Ecology. 90: 170–182. doi:10.1890/08-0207.1.
  12. ^ Chesson, Peter; Kuang, Jessica (2008). "The interaction between predation and competition". Nature. 456 (7219): 235–238. doi:10.1038/nature07248. PMID 19005554.
  13. ^ Holt, Robert (1977). "Predation, apparent competition, and structure of prey communities". Theoretical Population Biology. 12 (2): 197–229. doi:10.1016/0040-5809(77)90042-9. PMID 929457.
  14. ^ Chesson, Peter; Kuang, Jessica (2010). "The storage effect due to frequency-dependent predation in multispecies plant communities". Theoretical Population Biology. 78 (2): 148–164. doi:10.1016/j.tpb.2010.06.003. PMID 20600208.
  15. ^ Mordecai, Erin (2011). "Pathogen impacts on plant communities: Unifying theory, concepts, and empirical work". Ecological Monographs. 81 (3): 429–441. doi:10.1890/10-2241.1.
  16. ^ Kelly, Colleen; Bowler, Michael (2002). "Coexistence and relative abundance in forest tree species". Nature. 417 (6887): 437–440. doi:10.1038/417437a. PMID 12024212.
  17. ^ Kelly, Colleen; Bowler, Michael (2005). "A new application of storage dynamics: differential sensitivity, diffuse competition and temporal niches". Ecology. 86 (4): 1012–1022. doi:10.1890/04-0091.
  18. ^ a b Angert, Amy; Huxman, Travis; Chesson, Peter; Venable, D. Lawerance (2009). "Functional tradeoffs determine species coexistence via the storage effect". Proceedings of the National Academy of Sciences of the United States of America. 106 (28): 11641–11645. doi:10.1073/pnas.0904512106. PMC 2710622. PMID 19571002.
  19. ^ Angert, Amy; Huxman, Travis; Barron-Gafford, Greg; Gerst, Katherine; Venable, D. Lawerance (2009). "Linking growth strategies to long-term population dynamics in a guild of desert annuals". Journal of Ecology. 95 (2): 321–331. doi:10.1111/j.1365-2745.2006.01203.x.
  20. ^ Huxman, Travis; Barron-Gafford, Greg; Gerst, Katherine; Angert, Amy; Tyler, Anna; Venable, D. Lawerance (2009). "Photosynthetic resource-use efficiency and demographic variability in desert winter annual plants". Ecology. 89 (6): 1554–1563. doi:10.1890/06-2080.1. PMID 18589520.
Abiotic component

In biology and ecology, abiotic components or abiotic factors are non-living chemical and physical parts of the environment that affect living organisms and the functioning of ecosystems. Abiotic factors and the phenomena associated with them underpin all biology.

Abiotic components include physical conditions and non-living resources that affect living organisms in terms of growth, maintenance, and reproduction. Resources are distinguished as substances or objects in the environment required by one organism and consumed or otherwise made unavailable for use by other organisms.

Component degradation of a substance occurs by chemical or physical processes, e.g. hydrolysis. All non-living components of an ecosystem, such as atmospheric conditions and water resources, are called abiotic components.

Bacterivore

Bacterivores are free-living, generally heterotrophic organisms, exclusively microscopic, which obtain energy and nutrients primarily or entirely from the consumption of bacteria. Many species of amoeba are bacterivores, as well as other types of protozoans. Commonly, all species of bacteria will be prey, but spores of some species, such as Clostridium perfringens, will never be prey, because of their cellular attributes.

Copiotroph

A copiotroph is an organism found in environments rich in nutrients, particularly carbon. They are the opposite to oligotrophs, which survive in much lower carbon concentrations.

Copiotrophic organisms tend to grow in high organic substrate conditions. For example, copiotrophic organisms grow in Sewage lagoons. They grow in organic substrate conditions up to 100x higher than oligotrophs.

Decomposer

Decomposers are organisms that break down dead or decaying organisms, and in doing so, they carry out the natural process of decomposition. Like herbivores and predators, decomposers are heterotrophic, meaning that they use organic substrates to get their energy, carbon and nutrients for growth and development. While the terms decomposer and detritivore are often interchangeably used, detritivores must ingest and digest dead matter via internal processes while decomposers can directly absorb nutrients through chemical and biological processes hence breaking down matter without ingesting it. Thus, invertebrates such as earthworms, woodlice, and sea cucumbers are technically detritivores, not decomposers, since they must ingest nutrients and are unable to absorb them externally.

Dominance (ecology)

Ecological dominance is the degree to which a taxon is more numerous than its competitors in an ecological community, or makes up more of the biomass.

Most ecological communities are defined by their dominant species.

In many examples of wet woodland in western Europe, the dominant tree is alder (Alnus glutinosa).

In temperate bogs, the dominant vegetation is usually species of Sphagnum moss.

Tidal swamps in the tropics are usually dominated by species of mangrove (Rhizophoraceae)

Some sea floor communities are dominated by brittle stars.

Exposed rocky shorelines are dominated by sessile organisms such as barnacles and limpets.

Energy Systems Language

The Energy Systems Language, also referred to as Energese, Energy Circuit Language, or Generic Systems Symbols, was developed by the ecologist Howard T. Odum and colleagues in the 1950s during studies of the tropical forests funded by the United States Atomic Energy Commission. They are used to compose energy flow diagrams in the field of systems ecology.

Feeding frenzy

In ecology, a feeding frenzy occurs when predators are overwhelmed by the amount of prey available. For example, a large school of fish can cause nearby sharks, such as the lemon shark, to enter into a feeding frenzy. This can cause the sharks to go wild, biting anything that moves, including each other or anything else within biting range. Another functional explanation for feeding frenzy is competition amongst predators. This term is most often used when referring to sharks or piranhas. It has also been used as a term within journalism.

Food chain

A food chain is a linear network of links in a food web starting from producer organisms (such as grass or trees which use radiation from the Sun to make their food) and ending at apex predator species (like grizzly bears or killer whales), detritivores (like earthworms or woodlice), or decomposer species (such as fungi or bacteria). A food chain also shows how the organisms are related with each other by the food they eat. Each level of a food chain represents a different trophic level. A food chain differs from a food web, because the complex network of different animals' feeding relations are aggregated and the chain only follows a direct, linear pathway of one animal at a time. Natural interconnections between food chains make it a food web.

A common metric used to the quantify food web trophic structure is food chain length. In its simplest form, the length of a chain is the number of links between a trophic consumer and the base of the web and the mean chain length of an entire web is the arithmetic average of the lengths of all chains in a food web.Many food webs have a keystone species (Such as Sharks) . A keystone species is a species that has a large impact on the surrounding environment and can directly affect the food chain. If this keystone species dies off it can set the entire food chain off balance. Keystone species keep herbivores from depleting all of the foliage in their environment and preventing a mass extinction.Food chains were first introduced by the Arab scientist and philosopher Al-Jahiz in the 10th century and later popularized in a book published in 1927 by Charles Elton, which also introduced the food web concept.

Lithoautotroph

A lithoautotroph or chemolithoautotroph is a microbe which derives energy from reduced compounds of mineral origin. Lithoautotrophs are a type of lithotrophs with autotrophic metabolic pathways. Lithoautotrophs are exclusively microbes; macrofauna do not possess the capability to use mineral sources of energy. Most lithoautotrophs belong to the domain Bacteria, while some belong to the domain Archaea. For lithoautotrophic bacteria, only inorganic molecules can be used as energy sources. The term "Lithotroph" is from Greek lithos (λίθος) meaning "rock" and trōphos (τροφοσ) meaning "consumer"; literally, it may be read "eaters of rock". Many lithoautotrophs are extremophiles, but this is not universally so.

Lithoautotrophs are extremely specific in using their energy source. Thus, despite the diversity in using inorganic molecules in order to obtain energy that lithoautotrophs exhibit as a group, one particular lithoautotroph would use only one type of inorganic molecule to get its energy.

Mesotrophic soil

Mesotrophic soils are soils with a moderate inherent fertility. An indicator of soil fertility is its base status, which is expressed as a ratio relating the major nutrient cations (calcium, magnesium, potassium and sodium) found there to the soil's clay percentage. This is commonly expressed in hundredths of a mole of cations per kilogram of clay, i.e. cmol (+) kg−1 clay.

Mycotroph

A mycotroph is a plant that gets all or part of its carbon, water, or nutrient supply through symbiotic association with fungi. The term can refer to plants that engage in either of two distinct symbioses with fungi:

Many mycotrophs have a mutualistic association with fungi in any of several forms of mycorrhiza. The majority of plant species are mycotrophic in this sense. Examples include Burmanniaceae.

Some mycotrophs are parasitic upon fungi in an association known as myco-heterotrophy.

Niche differentiation

The term niche differentiation (synonymous with niche segregation, niche separation and niche partitioning), as it applies to the field of ecology, refers to the process by which competing species use the environment differently in a way that helps them to coexist. Niche differentiation is also defined as the role in which a species plays in the ecosystem, otherwise known as how an organism or species "makes a living." The competitive exclusion principle states that if two species with identical niches (i.e., ecological roles) compete, then one will inevitably drive the other to extinction. This rule also tells us that two species can't have the same exact niche in a habitat and coexist together, at least in a stable manner. When two species differentiate their niches, they tend to compete less strongly, and are thus more likely to coexist. Species can differentiate their niches in many ways, such as by consuming different foods, or using different parts of the environment.

As an example of niche partitioning, several anole lizards in the Caribbean islands share common food needs—mainly insects. They avoid competition by occupying different physical locations. Although these reptiles might occupy different locations, you may also find groups living around the same area, in which can contain up to as many as fifteen different lizards! For example, some live on the leaf litter floor while others live on branches. Species who live in different areas compete less for food and other resources, which minimizes competition between species. However, species who live in similar areas compete strongly.

Organotroph

An organotroph is an organism that obtains hydrogen or electrons from organic substrates. This term is used in microbiology to classify and describe organisms based on how they obtain electrons for their respiration processes. Some organotrophs such as animals and many bacteria, are also heterotrophs. Organotrophs can be either anaerobic or aerobic.

Antonym: Lithotroph, Adjective: Organotrophic.

Planktivore

A planktivore is an aquatic organism that feeds on planktonic food, including zooplankton and phytoplankton.

Population cycle

A population cycle in zoology is a phenomenon where populations rise and fall over a predictable period of time. There are some species where population numbers have reasonably predictable patterns of change although the full reasons for population cycles is one of the major unsolved ecological problems. There are a number of factors which influence population change such as availability of food, predators, diseases and climate.

Recruitment (biology)

In biology, especially marine biology, recruitment occurs when a juvenile organism joins a population, whether by birth or immigration, usually at a stage whereby the organisms are settled and able to be detected by an observer.There are two types of recruitment: closed and open.In the study of fisheries, recruitment is "the number of fish surviving to enter the fishery or to some life history stage such as settlement or maturity".

Relative abundance distribution

In the field of ecology, the relative abundance distribution (RAD) or species abundance distribution describes the relationship between the number of species observed in a field study as a function of their observed abundance. The graphs obtained in this manner are typically fitted to a Zipf–Mandelbrot law, the exponent of which serves as an index of biodiversity in the ecosystem under study.

Sex-limited genes

Sex-limited genes are genes that are present in both sexes of sexually reproducing species but are expressed in only one sex and remain 'turned off' in the other. In other words, sex-limited genes cause the two sexes to show different traits or phenotypes, despite having the same genotype. This term is restricted to autosomal traits, and should not be confused with sex-linked characteristics, which have to do with genetic differences on the sex chromosomes (see sex-determination system). Sex-limited genes are also distinguished from sex-influenced genes, where the same gene will show differential expression in each sex. Sex-influenced genes commonly show a dominant/recessive relationship, where the same gene will have a dominant effect in one sex and a recessive effect in the other (for example, male pattern baldness).

Sex-limited genes are responsible for sexual dimorphism, which is a phenotypic (directly observable) difference between males and females of the same species. These differences can be reflected in size, color, behavior (ex: levels of aggression), and morphology. An example of sex-limited genes are genes which instruct the male elephant seals to grow big and fight, at the same time instructing female seals to grow small and avoid fights. These genes are also responsible for some female beetles' inability to grow exaggerated mandibles, research that is discussed in detail later in this article.

The overall point of sex-limited genes is to resolve intralocus sexual conflict. In other words, these genes try to resolve the "push-pull" between males and females over trait values for optimal phenotype. Without these genes, organisms would be forced to settle on an average trait value, incurring costs on both sexes. With these genes, it is possible to 'turn off' the genes in one sex, allowing both sexes to attain (or at least, approach very closely) their optimal phenotypes.

Species richness

Species richness is the number of different species represented in an ecological community, landscape or region. Species richness is simply a count of species, and it does not take into account the abundances of the species or their relative abundance distributions. Species diversity takes into account both species richness and species evenness.

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